# Documentation

```{toctree}
:caption: Welcome
source/welcome.md
```

```{toctree}
:caption: Setup
source/setup.md
```

```{toctree}
:caption: Documentation
source/graphical_user_interface.md
source/command_line_options.md

```

```{toctree}
:caption: References
source/configuration.md
source/parameters.md
source/result_files.md
source/faq.md
source/citations.md
```